PARA-ZK

LLM-Wiki

3 min read

LLM-Wiki/ is PARA-ZK’s LLM-owned synthesis layer. It is derived from canonical notes, not a second place to keep source truth.

Canonical knowledge lives in Resources, PARA notes, and ZK notes. Wiki pages summarize and connect those sources so future LLM work can read a compact map before acting.

See it

Browse a generated wiki: LLM-Wiki example (AI papers).

Wiki pages cite canonical notes through their references registry and backtick citation tokens:

`PZ[abc123]`
`PZ[abc123#Training Loop]`

Use normal body [[links]] between wiki concept pages. Do not link canonical notes back into LLM-Wiki/; the wiki depends on the sources, not the other way around.

Create Wiki Pages

Create pages under exactly one domain folder:

optsidian para-zk:create-llm-wiki title="AI/Diffusion Policy" by="gpt-5"

The path is LLM-Wiki/<domain>/<concept>.md. A concept is unique across the wiki: creating the same concept under another domain returns the existing page instead of duplicating it. When the first page in a domain is created, PARA-ZK also creates LLM-Wiki/<domain>/index.md as that domain’s hub.

create-llm-wiki and update-llm-wiki accept by=<model-id> for authorship. Creation stamps created_by and updated_by; changed updates stamp updated_by.

Move an existing concept to a better domain with refile-llm-wiki; this updates the domain tag, rewrites links through the vault rename path, and creates the target domain hub when missing:

optsidian para-zk:refile-llm-wiki title="AI/Diffusion Policy" domain="motion-generation" by="gpt-5"

Write Synthesis

LLM-Wiki pages expose the same managed surface contract as other PARA-ZK notes:

optsidian para-zk:update-llm-wiki title="AI/Diffusion Policy" key=body op=set value=@/absolute/path/body.md by="gpt-5"
optsidian para-zk:update-llm-wiki title="AI/Diffusion Policy" key=references op=insert value_json='{"link":"[[PARA/Resources/Source Paper.md]]","description":"Canonical source"}'

Read the inserted reference id before citing it:

optsidian para-zk:read-llm-wiki title="AI/Diffusion Policy" key=references limit=all format=json

Then cite that stable id from the body with `PZ[<id>]`. Bare PZ[<id>] text and positional `PZ[0]` input do not render.

Ingest Candidates

para-zk:wiki-ingest-candidates lists source notes that should be folded into the wiki without reading source or wiki bodies:

optsidian para-zk:wiki-ingest-candidates mode=uncited type=resource limit=all format=json
optsidian para-zk:wiki-ingest-candidates mode=delta limit=50 format=json
optsidian para-zk:wiki-ingest-candidates mode=per-import source_path="PARA/Resources/Source Paper.md" format=json

Candidate modes:

  • uncited: find ingestable sources with no incoming LLM-Wiki citation.
  • delta: find uncited sources and sources newer than citing wiki pages.
  • per-import: process source paths immediately after import.
  • re-ingest: deliberately refresh selected source paths.

Ingestable source types are resource, digest, permanent, and subnote.

Retopology Candidates

para-zk:wiki-retopology-candidates ranks domain index pairs without reading concept-page bodies:

optsidian para-zk:wiki-retopology-candidates limit=20
optsidian para-zk:wiki-retopology-candidates domain=language-models limit=10
optsidian para-zk:wiki-retopology-candidates domain=language-models depth=3 limit=10

Use it to choose which hubs to inspect during domain split, merge, refile, or cross-domain link planning. Scores use TF-IDF weighted visible index text, with wikilinks reduced to their labels and body bigrams included at lighter weight; explicit cross-domain links stay visible as evidence and graph connections without affecting the score. In Obsidian, per-index term counts are cached in .obsidian/plugins/para-zk/retopology-cache.json and invalidated by file stat plus a hash of the term-counting rules. The cache read limit defaults to 16 MiB and can be raised with retopologyCacheMaxMiB in the plugin config; results include a warning after the cache exceeds 95% of that limit. Each candidate includes the shortest undirected index-to-index connection within depth; focused mode also returns an undirected index graph neighborhood. depth defaults to 2. It is a triage signal, not the final topology judgment.

Audit Checks

PARA-ZK audit includes wiki-specific checks:

  • upward_wiki_link: a canonical note links into an llm-wiki note.
  • orphan_wiki_page: a wiki page has no incoming links from other wiki pages.
  • wiki_tag_domain_mismatch: a wiki page’s llm-wiki/<domain> tag does not match its folder domain.

Run:

optsidian para-zk:audit type=llm-wiki format=json
optsidian para-zk:audit fix=true format=json

fix=true can correct wiki tag domain drift. Link-shape findings remain review hints.

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